Evolution and evolvability  ·  Article

Memory and fitness optimisation under fluctuating environments (lac operon)

The lac operon is a bacterial gene set induced by lactose through the inducer allolactose. Lambert and Kussell model lac induction under fluctuating glucose and lactose environments. They also ran IPTG pulse experiments to see whether lactose metabolism or catabolite repression is needed for the overshoot, and Schavemaker and Lynch discuss the cost of expressing the operon.3458 Other authors frame adaptation to fluctuating environments as attractor selection or as inference.27

Earliest held
2006, Kashiwagi A, Urabe I, Kaneko…
Most discussed in
Memory and fitness optimization of bacteria…, 2014
In the library
40 passages in 9 works
Rewritten
2026-10-21
01

Statistics of changing environments

Katz and Springer (2016) cite early theoretical work by Richard Levins (1968). In their account, Levins argued that the statistical relations between signals in a fluctuating environment are central to adaptation.6 They add that this holds whatever costs different strains pay in each environmental state. As an example they note that yeast strains differ in the preparation time needed to switch from glucose to galactose. Katz and Springer propose that adaptation to changing environments can be framed as inference under uncertainty.7 They illustrate this with glucose-galactose adaptation in yeast, not the lac operon, and say the framework applies to other fluctuating environments.

02

Attractor selection

Kashiwagi, Urabe, Kaneko and Yomo (2006) studied a gene network that adapts to environmental change by fitness-driven selection of states. They concede that attractor selection, because it is stochastic, may be less efficient than ordinary signal transduction. They argue that it may still keep cells from dying in fluctuating environments.1 They also suggest it could let a network respond to unknown changes without many specific sensors and transducers.2 Their constructs used parts such as the lacI gene and the Ptrc promoter from pTrc99A.

03

Lac induction experiments

Lambert and Kussell (2014) modelled lac induction in a population facing sudden environmental changes. They used an earlier model and added an equation for mRNA transcription.3 They then pulsed cells grown in glucose medium with the unmetabolizable inducer IPTG. The result was identical to induction by lactose. IPTG induces the operon directly, while lactose needs LacZ activity to make allolactose.4 From this the authors concluded that neither lactose metabolism nor changes in catabolite repression are required for the observed overshoot.5 They also report that the stringent response to carbon starvation does not significantly affect induction dynamics.

04

Cost of expression

Schavemaker and Lynch (2025) review how the energetic cost of a cellular trait affects fitness. They say this should ideally be tested by adding nonfunctional proteins. One attempt used the lac operon, expressed artificially without lactose so that cells bore the burden and gained no benefit. Growth rate fell by more than a linear model predicted.8 The review notes that the defect may partly reflect chaperone burden or cross-reactivity of lac proteins with other cellular traits.

SourcesEach quotation was checked word for word against the passage it opens.
  1. Due to its stochastic nature, attractor selection may not be as efficient as ordinary signal transduction, but it may prevent cells from dying in fluctuating environments.Kashiwagi A, Urabe I, Kaneko K, Yomo T, 2006 · Adaptive response of a gene network to environmental changes by fitness-induced… · open at passage 35
  2. Attractor selection may facilitate the design of a network that can robustly respond in an adaptive manner to unknown environmental changesKashiwagi A, Urabe I, Kaneko K, Yomo T, 2006 · Adaptive response of a gene network to environmental changes by fitness-induced… · open at passage 35
  3. The lac induction dynamics of a population subjected to sudden environmental changes are modeled as described in [35], with an additional equation to account for mRNA transcription.Lambert G, Kussell E, 2014 · Memory and fitness optimization of bacteria under fluctuating environments · open at passage 32
  4. In contrast to induction using lactose, which requires LacZ activity to produce the inducer allolactose, IPTG induces the lac operon directly.Lambert G, Kussell E, 2014 · Memory and fitness optimization of bacteria under fluctuating environments · open at passage 20
  5. Hence, we see that neither lactose/allolactose metabolism nor changes in catabolite repression are required for the observed overshoot.Lambert G, Kussell E, 2014 · Memory and fitness optimization of bacteria under fluctuating environments · open at passage 20
  6. Richard Levins argued that the statistical relations between signals in the fluctuating environment are central to adaptation.Katz Y, Springer M, 2016 · Probabilistic adaptation in changing microbial environments · open at passage 11
  7. We propose that adaptation to changing environments can be framed as inference under uncertainty (Jaynes, 2003).Katz Y, Springer M, 2016 · Probabilistic adaptation in changing microbial environments · open at passage 12
  8. Examination of the growth rate at different lac operon expression levels revealed a decrease in growth rate larger than that predicted by a linear model (18).Schavemaker PE, Lynch M, 2025 · Bioenergetics and the Evolution of Cellular Traits · open at passage 9
Linked ideas
Treats history-dependent bacterial behaviour, the same kind of memory that lac induction dynamics under changing sugars are used to probe.
Frames memory as adaptation, the reading applied here to induction dynamics that help growth in fluctuating nutrients.
Katz and Springer frame adaptation as inference under uncertainty, which a simple cellular circuit could implement.
Evolvabilityrelated to
Kashiwagi and colleagues suggest attractor selection could act as preadaptation for later signal-specific pathways, contributing to evolvability.
Concerns state-based memory in circuits, comparable to attractor selection among network states.
Another bacterial response to changing chemical environments, acting through behaviour instead of gene induction.
Covers the same fitness question for bacteria in changing conditions, of which lac operon memory is one case.
Where it is discussedPassages matching lac operon, lac induction, LacZ, allolactose
2014Memory and fitness optimization of bacteria under fluctuating environments · Lambert G, Kussell E23
2006Adaptive response of a gene network to environmental changes by fitness-induced… · Kashiwagi A, Urabe I, Kaneko K, Yomo T4
2017The brain is required for normal muscle and nerve patterning during early… · Herrera-Rincon C, Herrera-Rincon C, Pai…4
2016Probabilistic adaptation in changing microbial environments · Katz Y, Springer M3
2021Towards the Idea of Molecular Brains · Timsit Y, Grégoire SP2
2025Bioenergetics and the Evolution of Cellular Traits · Schavemaker PE, Lynch M1
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2017The Unfolded Protein Response: At the Intersection between Endoplasmic… · Carreras-Sureda A, Pihán P, Hetz C1
2011Histone deacetylase activity is necessary for left-right patterning during… · Carneiro K, Donnet C, Rejtar T, Karger…1