Bioenergetics  ·  Article

IF1 regulatory protein and inhibition of ATP synthase

IF1 is the endogenous inhibitor protein of mitochondrial ATP synthase. It binds the enzyme reversibly. Kaludercic and Giorgio (2016) describe binding as favoured by low matrix pH and low membrane potential, which limits ATP hydrolysis and energy dissipation1. Kaludercic and Giorgio also tie it to ATP sparing, enzyme dimers, cell death pathways and cancer redox balance. Morelli and colleagues call it essential, but they also cite evidence that inhibition of hydrolysis does not depend only on IF145.

Earliest held
2016, Kaludercic N, Giorgio V
Most discussed in
Structure of the dimeric ATP synthase from…, 2020
In the library
10 passages in 6 works
Rewritten
2026-11-02
01

Binding and proposed roles

Kaludercic and Giorgio (2016) review IF1 as a reversible inhibitor whose binding is promoted by low matrix pH and membrane potential1. They note that its role has been studied extensively in myocardial ischemia and preconditioning, where it seems to mediate ATP synthase inhibition and so spare ATP. They add that IF1 seems to regulate the oligomeric state of the enzyme, raising cristae density and the formation of dimers2. Morelli and colleagues (2019) call IF1 essential for stopping reversal of ATP synthase under uncoupled conditions, particularly in brain, which has few energy reserves4.

02

How essential is it?

Morelli and colleagues (2019) cite a result that complicates this picture. Knocking down IF1 in HeLa cells fitted with a FRET sensor lowered cellular ATP by about a third. Cell viability and mitochondrial morphology were unaffected, which they call surprising4. They also cite a report that deleting the IF1-like ζ subunit from Paracoccus denitrificans has little influence on ATP hydrolysis by the synthase5. From this they conclude that inhibition of hydrolysis by uncoupled ATP synthase does not depend only on IF1, and that the subject needs further investigation5.

03

Cancer and the pore

Kaludercic and Giorgio (2016) observe that most cancer cells are highly glycolytic and reduce ATP synthase activity, in part by overexpressing IF11. They argue that cancer cells depend on a delicate redox balance, since excess ROS can promote PTP opening and cell death. They speculate that IF1 and CyPD may modulate the PTP differently in cancer cells. They add that the ROS signalling triggered by IF1 overexpression in many cancer types is still unresolved3. Rottenberg (2023) cites work showing that IF1 activates the mPTP. He uses this to argue that effects Berry and colleagues reported on membrane potential in C. elegans can be attributed to mPTP activity7.

04

Structure and reverse mode

Spikes, Montgomery and Walker (2020) determined the structure of the dimeric bovine ATP synthase by cryo-EM. The enzyme was inhibited with residues 1 to 60 of IF1 and purified with detergents and phospholipids6. Rauch-Kroehnert and colleagues (2026) describe a setting where the inhibitor matters for the direction of flux. In stressed cardiomyocytes and in mitofusin-2 deficiency, ANT2 imports glycolytic ATP so that reverse synthase activity can maintain membrane potential. IF1 constrains this process to prevent ATP depletion8.

SourcesEach quotation was checked word for word against the passage it opens.
  1. IF1 is the endogenous inhibitor of ATP synthase that reversibly binds to the enzyme. Its binding is promoted by low matrix pH and membrane potential, thereby limiting ATP hydrolysis and energy dissipationKaludercic N, Giorgio V, 2016 · The Dual Function of Reactive Oxygen/Nitrogen Species in Bioenergetics and Cell… · open at passage 12
  2. IF1 seems to regulate the oligomeric state of ATP synthase, increasing the density of cristae and formation of ATP synthase dimersKaludercic N, Giorgio V, 2016 · The Dual Function of Reactive Oxygen/Nitrogen Species in Bioenergetics and Cell… · open at passage 12
  3. it is tempting to speculate that PTP might be differently modulated by IF1 and CyPD in cancer cellsKaludercic N, Giorgio V, 2016 · The Dual Function of Reactive Oxygen/Nitrogen Species in Bioenergetics and Cell… · open at passage 13
  4. IF1 knock down in HeLa cells [80] equipped with a FRET sensor for measuring the intracellular ATP concentration, surprisingly, did not affect cell viability or mitochondrial morphologyMorelli AM, Ravera S, Calzia D, Panfoli I, 2019 · An update of the chemiosmotic theory as suggested by possible proton currents… · open at passage 27
  5. deleting the IF1-like ζ subunit from Paracoccus denitrificans has little influence on ATP hydrolysis by ATP synthase [81]Morelli AM, Ravera S, Calzia D, Panfoli I, 2019 · An update of the chemiosmotic theory as suggested by possible proton currents… · open at passage 27
  6. The dimeric enzyme, inhibited by residues 1 to 60 of regulatory protein IF1, was purified in the presence glycodiosgenin, Brij-35, and phospholipidsSpikes TE, Montgomery MG, Walker JE, 2020 · Structure of the dimeric ATP synthase from bovine mitochondria · open at passage 5
  7. The protein IF1 interacts with ATP synthase, another component of mPTP [18], and was shown to activate mPTP [81]; therefore, the deletion of mal-2 is expected to inhibit mPTP.Rottenberg H, 2023 · The Reduction in the Mitochondrial Membrane Potential in Aging: The Role of the… · open at passage 42
  8. ANT2 imports cytosolic glycolytic ATP into mitochondria, enabling reverse F1Fo-ATP synthase activity to maintain membrane potential (ΔΨm), a process constrained by Inhibitory factor (IF1) to prevent ATP depletionRauch-Kroehnert U, Heger J, Landmesser U, Dörner A, 2026 · Adenine Nucleotide Translocase: From Nucleotide Carrier to a Modulator of… · open at passage 14
Linked ideas
The structural work on the IF1-inhibited bovine dimer is a direct source for this article.
ANT2 supplies glycolytic ATP for reverse synthase activity, a process IF1 is reported to constrain.
Low membrane potential promotes IF1 binding, and reverse synthase activity is described as maintaining potential.
IF1 overexpression is one route by which glycolytic cancer cells reduce ATP synthase activity and ROS.
IF1 overexpression is linked to ROS signalling in cancer cells, with pathways still unresolved.
IF1 is reported to increase cristae density and favour ATP synthase dimers.
Oxidative phosphorylationpart of / contains
IF1 is an endogenous regulator of mitochondrial ATP synthase (the enzyme of oxidative phosphorylation), reversibly binding it to limit ATP hydrolysis and spare ATP when membrane potential falls.
Where it is discussedPassages matching IF1, inhibitor protein IF1, ATPase inhibitory factor 1, inhibited ATP synthase
2020Structure of the dimeric ATP synthase from bovine mitochondria · Spikes TE, Montgomery MG, Walker JE3
2023The Reduction in the Mitochondrial Membrane Potential in Aging: The Role of the… · Rottenberg H2
2016The Dual Function of Reactive Oxygen/Nitrogen Species in Bioenergetics and Cell… · Kaludercic N, Giorgio V2
2026Adenine Nucleotide Translocase: From Nucleotide Carrier to a Modulator of… · Rauch-Kroehnert U, Heger J, Landmesser…1
2019An update of the chemiosmotic theory as suggested by possible proton currents… · Morelli AM, Ravera S, Calzia D, Panfoli…1
2021A Walk in the Memory, from the First Functional Approach up to Its Regulatory… · Atlante A, Valenti D1